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2013-03-16we don't need a kmer file anymore :-)mutantturkey
2013-03-15eliminated the need for Nmers.txt:-)Calvin
2013-03-15added generate_kmers to the makefileCalvin
2013-03-15delete binariesCalvin
2013-03-15nbc addedCalvin
2013-03-15specify python2.7Calvin
2013-03-15specify python 2.7 in multifastaCalvin
2013-03-15updated multifasta_to_otu to is_compressedCalvin
2013-03-14formatting fixes and renamed isCompressed to is_compressedCalvin
2013-03-14fix automatically creating output directoryCalvin
2013-03-14fix multifasta_to_otu to use proper function names... need to get some automa...Calvin
2013-03-14fixed an incorrect namespaceCalvin
2013-03-14get rid of OS checks for count, assume it is called count-kmersCalvin
2013-03-14re-add the kmer filename checKCalvin
2013-03-13fix bad old commitCalvin
2013-03-13added multi_fasta_otu to cli.markdownCalvin
2013-03-13added matlab markdown and edited cliCalvin
2013-03-13added setup.py for python quikr moduleCalvin
2013-03-13updated makefile to install nbc properly and python properly.Calvin
2013-03-12initial commit of some documentationCalvin
2013-03-12removed multifasta's py extension, modified the --help argument output for q...Calvin
2013-03-11removed documented matlab, add bare makefileCalvin
2013-03-11move python stuff to python directoryCalvin
2013-03-11adding matlab codeCalvin
2013-03-08moving some stuffCalvin
2013-03-08fix quikr_train to work with updated quikr modulemutantturkey
2013-03-08convert into a module, rename out functions so all quikr functions are within...mutantturkey
2013-03-08fix quikrmutantturkey
2013-03-08fix multifasta_to_otumutantturkey
2013-03-07starting to modularizeCalvin
2013-03-07minor formatting cleanupCalvin
2013-03-07multifasta_to_otu.py support for compressionCalvin
2013-03-07added gzip compression supportCalvin
2013-03-07Check if file is compressedCalvin
2013-03-06removed debugging statementsCalvin
2013-03-06do the matrix rotations and manipulations in quikr_train instead of quikrCalvin
2013-03-06Cleanups and refactoringCalvin
2013-03-06fixed indexCalvin
2013-03-06formatting cleanups, removed unused import, deleted unused linesCalvin
2013-03-05Added OTU table output and grep parsingCalvin
2013-03-05simplify generate_kmers.pyCalvin
2013-03-05Added generate_kmers.pyCalvin
2013-02-28use the load from file instead of calling it directly, should work now.Calvin
2013-02-27working on the iteratorsCalvin
2013-02-27Create a dictionary of our trained matrix id'sCalvin
2013-02-27Write the comments in for the work to be doneCalvin
2013-02-27Update multifasta_to_otu.py for new quikr functionCalvin
2013-02-27* add helper quikr_load_trained_from_file to load fileCalvin
2013-02-26added multifasta.m and documenting itCalvin
2013-02-26changesCalvin
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