diff options
Diffstat (limited to 'src/matlab/quikr.m')
| -rw-r--r-- | src/matlab/quikr.m | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/src/matlab/quikr.m b/src/matlab/quikr.m index f295d2b..aa2a271 100644 --- a/src/matlab/quikr.m +++ b/src/matlab/quikr.m @@ -15,9 +15,9 @@ if nargin>1 error('too many input arguments');
end
-[status, counts]=unix(['count-kmers -r 6 -1 -u ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels
+[status, counts]=unix(['kmer_total_count -k 6 -i ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels
if status ~= 0
- error('count-kmers failed: ensure count-kmers is in your path.');
+ error('kmer_total_count failed: ensure kmer_total_count is in your path.');
end
counts=textscan(counts,'%f'); %convert into floats
|