diff options
Diffstat (limited to 'src/c/quikr_train.c')
| -rw-r--r-- | src/c/quikr_train.c | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/src/c/quikr_train.c b/src/c/quikr_train.c index 08a1f0a..1260b86 100644 --- a/src/c/quikr_train.c +++ b/src/c/quikr_train.c @@ -34,7 +34,7 @@ int main(int argc, char **argv) { unsigned long long position = 0; int verbose = 0; - + int force_name = 0; char *fasta_filename = NULL; char *output_file = NULL; @@ -45,6 +45,7 @@ int main(int argc, char **argv) { while (1) { static struct option long_options[] = { {"verbose", no_argument, 0, 'v'}, + {"force_name", no_argument, 0, 'f'}, {"help", no_argument, 0, 'h'}, {"version", no_argument, 0, 'V'}, {"input", required_argument, 0, 'i'}, @@ -55,7 +56,7 @@ int main(int argc, char **argv) { int option_index = 0; - c = getopt_long (argc, argv, "i:o:k:hvV", long_options, &option_index); + c = getopt_long (argc, argv, "i:o:k:fhvV", long_options, &option_index); if (c == -1) break; @@ -73,6 +74,9 @@ int main(int argc, char **argv) { case 'v': verbose = 1; break; + case 'f': + force_name = 1; + break; case 'V': printf("%s\n", VERSION); exit(EXIT_SUCCESS); @@ -117,7 +121,7 @@ int main(int argc, char **argv) { exit(EXIT_FAILURE); } - if(strcmp(&output_file[strlen(output_file) - 3], ".gz") != 0) { + if(strcmp(&output_file[strlen(output_file) - 3], ".gz") != 0 && !force_name) { char *temp = malloc(strlen(output_file) + 4); if(temp == NULL) { fprintf(stderr, "Could not allocate enough memory\n"); |