diff options
Diffstat (limited to 'src/c/quikr.c')
| -rw-r--r-- | src/c/quikr.c | 14 |
1 files changed, 6 insertions, 8 deletions
diff --git a/src/c/quikr.c b/src/c/quikr.c index fd1fbe5..01c5f63 100644 --- a/src/c/quikr.c +++ b/src/c/quikr.c @@ -197,27 +197,25 @@ int main(int argc, char **argv) { // normalize our kmer counts and our sensing_matrix - normalize_matrix(count_matrix_rare, 1, rare_width); normalize_matrix(sensing_matrix_rare, sensing_matrix->sequences, rare_width); + normalize_matrix(count_matrix_rare, 1, rare_width); // multiply our kmer counts and sensing matrix by lambda - for(x = 1; x < rare_width; x++) - count_matrix_rare[x] *= lambda; - - //TODO use one loop for(x = 0; x < sensing_matrix->sequences; x++) { for(y = 1; y < rare_width; y++) { sensing_matrix_rare[rare_width*x + y] *= lambda; } } - // count_matrix's first element should be zero - count_matrix_rare[0] = 0; - // stack one's on our first row of our sensing matrix for(x = 0; x < sensing_matrix->sequences; x++) { sensing_matrix_rare[x*rare_width] = 1.0; } + // count_matrix's first element should be zero + count_matrix_rare[0] = 0; + for(x = 1; x < rare_width; x++) + count_matrix_rare[x] *= lambda; + double *solution = nnls(sensing_matrix_rare, count_matrix_rare, sensing_matrix->sequences, rare_width); // normalize our solution vector |