diff options
Diffstat (limited to 'src/c/multifasta_to_otu.c')
| -rw-r--r-- | src/c/multifasta_to_otu.c | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/src/c/multifasta_to_otu.c b/src/c/multifasta_to_otu.c index 7513b11..fcb0822 100644 --- a/src/c/multifasta_to_otu.c +++ b/src/c/multifasta_to_otu.c @@ -38,7 +38,7 @@ char **get_fasta_files(char *directory) { exit(EXIT_FAILURE); } - while(e = readdir(dh)) + while((e = readdir(dh))) count++; e = NULL; @@ -226,11 +226,11 @@ int main(int argc, char **argv) { struct matrix *sensing_matrix = load_sensing_matrix(sensing_matrix_filename, kmer); double *sensing_matrix_ptr = sensing_matrix->matrix; - unsigned long long sequences = sensing_matrix->matrix; + unsigned long long sequences = sensing_matrix->sequences; if(verbose) { printf("directory count: %llu\n", dir_count); - printf("width: %llu\nsequences %llu\n", width, sensing_matrix->sequences); + printf("width: %llu\nsequences %llu\n", width, sequences); } unsigned long long *solutions = malloc(dir_count * sequences * sizeof(unsigned long long)); @@ -244,7 +244,7 @@ int main(int argc, char **argv) { #endif printf("Beginning to process samples\n"); #pragma omp parallel for shared(solutions, sensing_matrix_ptr, width, done, sequences) - for(long i = 0; i < dir_count; i++ ) { + for(size_t i = 0; i < dir_count; i++ ) { unsigned long long x = 0; unsigned long long y = 0; @@ -343,7 +343,7 @@ int main(int argc, char **argv) { double *solution = nnls(sensing_matrix_rare, count_matrix_rare, sequences, rare_width); // add the current solution to the solutions array - for(int z = 0; z < sequences; z++ ) { + for(unsigned long long z = 0; z < sequences; z++ ) { solutions[sensing_matrix->sequences*i + z] = (unsigned long long)round(solution[z] * file_sequence_count); } |