diff options
| author | Calvin <calvin@EESI> | 2013-05-14 17:00:33 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-05-14 17:00:33 -0400 |
| commit | 5df6980969d7fefd0ca90769bd3b566cb5210c01 (patch) | |
| tree | 866cf746553ac44d985f331ee6bb29f14ca6adad /src/matlab/quikrTrain.m | |
| parent | 6f4da548141286f7236823294788c3c18f5153db (diff) | |
have matlab use global executables
Diffstat (limited to 'src/matlab/quikrTrain.m')
| -rw-r--r-- | src/matlab/quikrTrain.m | 8 |
1 files changed, 1 insertions, 7 deletions
diff --git a/src/matlab/quikrTrain.m b/src/matlab/quikrTrain.m index 7960cca..abdba95 100644 --- a/src/matlab/quikrTrain.m +++ b/src/matlab/quikrTrain.m @@ -21,13 +21,7 @@ outputfilename=fullfile(pathtofile, [filename sprintf('-sensingmatrixK%d.txt',k) kmerfilename=sprintf('%dmers.txt',k); %This contains the list of 6-mers to count. In future versions this will be computed locally instead of being read in.
-if (isunix && not(ismac)) %this is for the linux version
- unix(['./probabilities-by-read-linux ' sprintf('%d',k) ' ' inputfasta ' ' kmerfilename ' > ' outputfilename]); %obtain the k-mer counts of the inputfasta read-by-read
-elseif ismac %mac version
- unix(['./probabilities-by-read-osx ' sprintf('%d',k) ' ' inputfasta ' ' kmerfilename ' > ' outputfilename]); %obtain the k-mer counts of the inputfasta read-by-read
-elseif ispc %No PC version
- error('Windows is not yet supported');
-end
+unix(['probabilities-by-read ' sprintf('%d',k) ' ' inputfasta ' ' kmerfilename ' > ' outputfilename]); %obtain the k-mer counts of the inputfasta read-by-read
fid=fopen(outputfilename); %open the output file
|