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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-06-19 10:41:38 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-06-19 10:41:38 -0400 |
| commit | 620e12d364148a0fbe8c60820a3c0a0f7c1561b9 (patch) | |
| tree | a4f015d2674bdd98f1e7eac4a0ffd9207a319085 /src/galaxy | |
| parent | 93485b7e9ffa0089d0bd32c066362d8bc31c06f5 (diff) | |
working multifasta2otu
Diffstat (limited to 'src/galaxy')
| -rw-r--r-- | src/galaxy/multifasta2otu.xml | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/src/galaxy/multifasta2otu.xml b/src/galaxy/multifasta2otu.xml index b80f8b2..eebe246 100644 --- a/src/galaxy/multifasta2otu.xml +++ b/src/galaxy/multifasta2otu.xml @@ -1,10 +1,10 @@ <tool id="multifasta" name="Multifasta"> <description>Get Abundances on Multiple Files</description> - <command interpreter="bash">multifasta_to_otu -k $kmer -s $db -f <( echo + <command>bash -c "multifasta_to_otu -k $kmer -s $db -f <( echo #for $input in $inputs: -"${input}" +${input} #end for - | xargs -n 1 ) -o $output</command> + | xargs -n 1 ) -o $output"</command> <inputs> <param name="inputs" multiple="true" type="data" format="fasta" label="input fasta"/> <param name="db" type="data" format="data" label="trained database"/> |