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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-09-09 17:53:01 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-09-09 17:53:01 -0400 |
| commit | a9b3d721ac6057a84377cdeedafa986f7cf35b95 (patch) | |
| tree | 9b3b3fced96978edafa1c2ebbc0a912539009495 /src/galaxy/multifasta2otu.xml | |
| parent | 3f3633d36cb033da5a7d616463a32397bd77c478 (diff) | |
| parent | 62067f0ca6db19fcdedc84476e68ba3864062f54 (diff) | |
Diffstat (limited to 'src/galaxy/multifasta2otu.xml')
| -rw-r--r-- | src/galaxy/multifasta2otu.xml | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/src/galaxy/multifasta2otu.xml b/src/galaxy/multifasta2otu.xml index b80f8b2..eebe246 100644 --- a/src/galaxy/multifasta2otu.xml +++ b/src/galaxy/multifasta2otu.xml @@ -1,10 +1,10 @@ <tool id="multifasta" name="Multifasta"> <description>Get Abundances on Multiple Files</description> - <command interpreter="bash">multifasta_to_otu -k $kmer -s $db -f <( echo + <command>bash -c "multifasta_to_otu -k $kmer -s $db -f <( echo #for $input in $inputs: -"${input}" +${input} #end for - | xargs -n 1 ) -o $output</command> + | xargs -n 1 ) -o $output"</command> <inputs> <param name="inputs" multiple="true" type="data" format="fasta" label="input fasta"/> <param name="db" type="data" format="data" label="trained database"/> |