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authorCalvin Morrison <mutantturkey@gmail.com>2014-03-06 11:05:09 -0500
committerCalvin Morrison <mutantturkey@gmail.com>2014-03-06 11:05:09 -0500
commit4bc4954b2476397c29b57d20bd3eb47926b30860 (patch)
tree8150ef6ca328062d66c23a798867cd0b87f60640 /src/c/multifasta_to_otu.1
parent219a8ac002a1333e46f03db3d85289120f14cef1 (diff)
input-filelist
Diffstat (limited to 'src/c/multifasta_to_otu.1')
-rw-r--r--src/c/multifasta_to_otu.15
1 files changed, 5 insertions, 0 deletions
diff --git a/src/c/multifasta_to_otu.1 b/src/c/multifasta_to_otu.1
index 748e9e9..d047ad1 100644
--- a/src/c/multifasta_to_otu.1
+++ b/src/c/multifasta_to_otu.1
@@ -5,6 +5,8 @@ multifasta_to_otu \- create a QIIME OTU table based on Quikr results.
.B multifasta_to_otu
.RB [ \-i
.IR input-directory ]
+.RB [ \-f
+.IR input-filelist ]
.RB [ \-s
.IR sensing-matrix]
.RB [ \-k
@@ -29,6 +31,9 @@ number of times a specimen was seen in all of the samples.
.B \-i, --input-directory
the directory containing the samples' fasta files of reads (note each fasta file should correspond to a separate sample)
.TP
+.B \-f, --input-filelist
+a file containing list of fasta files to process seperated by newline (same rules apply as input-directory)
+.TP
.B \-s, --sensing-matrix
location of the sensing matrix.
.TP