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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-24 17:20:14 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-24 17:20:14 -0400 |
| commit | 4cab49ac3934a8fa568c7aee8484bd710f83c4e3 (patch) | |
| tree | 08f486b7a3f499743b2e36bca8de29892d1ed050 /doc/install.markdown | |
| parent | d2a7c2a428a5c5ead81d87610d6b04a0e179295d (diff) | |
update documentation
Diffstat (limited to 'doc/install.markdown')
| -rw-r--r-- | doc/install.markdown | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/doc/install.markdown b/doc/install.markdown index eb0e8ce..3308f83 100644 --- a/doc/install.markdown +++ b/doc/install.markdown @@ -5,23 +5,24 @@ To use Quikr there are several prerequisites. + Mac OS X 10.6.8 or GNU/Linux + 4Gb of RAM minimum. Absolutely neccessary. + gcc that supports OpenMP -+ mlton the Standard-ML compiler ### Python Requirements ### +*the python version is out of date* + Python 2.7+ + Scipy + Numpy + BioPython +### Matlab Requrements ### ++ [dna\_utils](http://github.com/EESI/dna-utils/) must be installed + ### Mac Requirements ### + Mac OS X 10.6.8 (what we have tested) + GCC 4.7 or newer. (gcc 4.2 did not work, and is the default installation) -+ mlton the Standard-ML compiler + OpenMP libraries (libgomp, usually comes with gcc) ### Linux Requirements ### + GCC 4.7 or newer -+ OCaml compiler mlton + OpenMP libraries (libgomp, usually comes with gcc) We also have a Quikr implementation in Matlab so that you can easily integrate |