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| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-31 10:17:47 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-31 10:17:47 -0400 |
| commit | bc78ff5c01b496fa9fa64a4f41e9c430087d82a3 (patch) | |
| tree | d7f6228eef995c3073b60ec636f8993c192b2f3f | |
| parent | 5f73d9a17280b0a388936365bace8a64a5568cea (diff) | |
fix a bug so we only read when the length is greater han the kmer
| -rw-r--r-- | src/c/kmer_utils.c | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/src/c/kmer_utils.c b/src/c/kmer_utils.c index 3a1eba4..3c2a4cd 100644 --- a/src/c/kmer_utils.c +++ b/src/c/kmer_utils.c @@ -116,6 +116,8 @@ unsigned long long * get_kmer_counts_from_file(const char *fn, const unsigned in // strip out all other newlines to handle multiline sequences str = strnstrip(start, str, '\n',start_len); size_t seq_length = strlen(str); + if(seq_length < kmer) + continue; // relace A, C, G and T with 0, 1, 2, 3 respectively // everything else is 5 |