diff options
| author | Calvin <calvin@EESI> | 2013-06-12 15:31:09 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-06-12 15:31:09 -0400 |
| commit | e37cb0a27e0cc9cca59413dcfb1784ba4ff25608 (patch) | |
| tree | 0d15b6eb7064add64727bef1d926a3a273fca09c | |
| parent | aed43e9f4d1cf646895e72a940687130700e7b1a (diff) | |
update multifasta paths
| -rw-r--r-- | src/matlab/multifasta2otutable_gg94_2011.m | 4 | ||||
| -rw-r--r-- | src/matlab/multifasta2otutable_rdp7.m | 2 |
2 files changed, 3 insertions, 3 deletions
diff --git a/src/matlab/multifasta2otutable_gg94_2011.m b/src/matlab/multifasta2otutable_gg94_2011.m index 9078487..b9dae73 100644 --- a/src/matlab/multifasta2otutable_gg94_2011.m +++ b/src/matlab/multifasta2otutable_gg94_2011.m @@ -6,10 +6,10 @@ %cd /path/to/Quikr
%User-defined variables
-input_directory='../separated_samples'; %path to input directory of samples
+input_directory='~/data/input'; %path to input directory of samples
output_directory='quikr_results'; %path to where want output files to go
otu_table_name='gg1194_otu_octave.txt'; %name of output otu_table filename
-trainingdatabasefilename='../../../data/gg_94_otus_4feb2011.fasta'; %full path to the FASTA file you wish to use as a training database
+trainingdatabasefilename='../../data/gg_94_otus_4feb2011.fasta'; %full path to the FASTA file you wish to use as a training database
mkdir([output_directory]);
diff --git a/src/matlab/multifasta2otutable_rdp7.m b/src/matlab/multifasta2otutable_rdp7.m index 9c83ea9..1138a6a 100644 --- a/src/matlab/multifasta2otutable_rdp7.m +++ b/src/matlab/multifasta2otutable_rdp7.m @@ -9,7 +9,7 @@ input_directory='../../separated_samples'; %path to input directory of samples output_directory='quikr_results'; %path to where want output files to go
otu_table_name='rdp_otu_table.txt'; %name of output otu_table filename
%Do not have to define trainingdatabase file here
-[headers,~]=fastaread('../../../data/trainset7_112011.fa'); %read in the training database
+[headers,~]=fastaread('../../data/trainset7_112011.fa'); %read in the training database
mkdir([output_directory])
thedirs=dir([input_directory]);
|