From e37cb0a27e0cc9cca59413dcfb1784ba4ff25608 Mon Sep 17 00:00:00 2001 From: Calvin Date: Wed, 12 Jun 2013 15:31:09 -0400 Subject: update multifasta paths --- src/matlab/multifasta2otutable_gg94_2011.m | 4 ++-- src/matlab/multifasta2otutable_rdp7.m | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/matlab/multifasta2otutable_gg94_2011.m b/src/matlab/multifasta2otutable_gg94_2011.m index 9078487..b9dae73 100644 --- a/src/matlab/multifasta2otutable_gg94_2011.m +++ b/src/matlab/multifasta2otutable_gg94_2011.m @@ -6,10 +6,10 @@ %cd /path/to/Quikr %User-defined variables -input_directory='../separated_samples'; %path to input directory of samples +input_directory='~/data/input'; %path to input directory of samples output_directory='quikr_results'; %path to where want output files to go otu_table_name='gg1194_otu_octave.txt'; %name of output otu_table filename -trainingdatabasefilename='../../../data/gg_94_otus_4feb2011.fasta'; %full path to the FASTA file you wish to use as a training database +trainingdatabasefilename='../../data/gg_94_otus_4feb2011.fasta'; %full path to the FASTA file you wish to use as a training database mkdir([output_directory]); diff --git a/src/matlab/multifasta2otutable_rdp7.m b/src/matlab/multifasta2otutable_rdp7.m index 9c83ea9..1138a6a 100644 --- a/src/matlab/multifasta2otutable_rdp7.m +++ b/src/matlab/multifasta2otutable_rdp7.m @@ -9,7 +9,7 @@ input_directory='../../separated_samples'; %path to input directory of samples output_directory='quikr_results'; %path to where want output files to go otu_table_name='rdp_otu_table.txt'; %name of output otu_table filename %Do not have to define trainingdatabase file here -[headers,~]=fastaread('../../../data/trainset7_112011.fa'); %read in the training database +[headers,~]=fastaread('../../data/trainset7_112011.fa'); %read in the training database mkdir([output_directory]) thedirs=dir([input_directory]); -- cgit v1.2.3