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VERSION=\"0.0.5\"
CC = g++
CFLAGS = -O3 -s -march=native -Wall -Wextra -DVERSION=$(VERSION) -std=c++11
DESTDIR = /usr/local/
all: libkmer.so kmer_total_count kmer_counts_per_sequence
libkmer.so: kmer_utils.o
$(CC) kmer_utils.c -o libkmer.so $(CFLAGS) -shared -fPIC
kmer_total_count: kmer_utils.c kmer_total_count.c kmer_utils.h
$(CC) kmer_utils.c kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
kmer_counts_per_sequence: kmer_utils.c kmer_counts_per_sequence.c kmer_utils.h
$(CC) kmer_utils.c kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS)
kmer_continuous_count: kmer_utils.c kmer_continuous_count.c kmer_utils.h
$(CC) kmer_utils.c kmer_continuous_count.c -o kmer_continuous_count $(CLIBS) $(CFLAGS)
clean:
rm -vf kmer_total_count kmer_counts_per_sequence kmer_continuous_count kmer_utils.o libkmer.so
rm -vf kmer_total_count kmer_counts_per_sequence kmer_continuous_count libkmer.so kmer_utils.o
debug: CFLAGS = -ggdb -Wall -Wextra -DVERSION=$(VERSION)\"-debug\" -std=c++11
debug: all
install: all
@cp -vf kmer_counts_per_sequence kmer_total_count kmer_continuous_count $(DESTDIR)/bin/
@cp -vf libkmer.so $(DESTDIR)/lib/
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