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VERSION=\"0.0.5\"
CC = g++-mp-4.8
CFLAGS = -O3 -s -march=native -Wall -Wextra -DVERSION=$(VERSION) -std=c++11
DESTDIR = /usr/local
all: libkmer.so kmer_total_count kmer_counts_per_sequence kmer_utils.o \
kmer_locations kmer_continuous_count
getline.o: getline/getline.c
$(CC) -c getline/getline.c -o getline.o $(CFLAGS)
kmer_utils.o: kmer_utils.c getline.o
$(CC) -c kmer_utils.c getline.o -O $(CFLAGS) -fPIC -DFORCE_GETLINE=1
libkmer.so: kmer_utils.o getline.o
$(CC) getline.o kmer_utils.o -o libkmer.so $(CFLAGS) -shared -fPIC
kmer_total_count: kmer_utils.o kmer_total_count.c kmer_utils.h
$(CC) getline.o kmer_utils.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
kmer_counts_per_sequence: kmer_utils.o kmer_counts_per_sequence.c kmer_utils.h
$(CC) getline.o kmer_utils.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS) -DFORCE_GETLINE=1
kmer_continuous_count: kmer_utils.o kmer_continuous_count.c kmer_utils.h
$(CC) getline.o kmer_utils.o kmer_continuous_count.c -o kmer_continuous_count $(CLIBS) $(CFLAGS)
kmer_locations: kmer_utils.o kmer_locations.c kmer_utils.h
$(CC) getline.o kmer_utils.o kmer_locations.c -o kmer_locations $(CLIBS) $(CFLAGS) -DFORCE_GETLINE=1
clean:
rm -vf kmer_total_count kmer_counts_per_sequence kmer_continuous_count \
kmer_utils.o libkmer.so kmer_locations getline.o
debug: CFLAGS = -ggdb -Wall -Wextra -DVERSION=$(VERSION)\"-debug\" -std=c++11
debug: all
install: all
install kmer_counts_per_sequence $(DESTDIR)/bin
install kmer_total_count $(DESTDIR)/bin
install kmer_continuous_count $(DESTDIR)/bin
install kmer_locations $(DESTDIR)/bin
cp -vf libkmer.so $(DESTDIR)/lib/
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