dna-utils.git - Tools for parsing FASTA files very fast

Age	Commit message (Expand)	Author
2014-02-01	backport stdin reading	Calvin Morrison
2014-02-01	use false instead of 0	Calvin Morrison
2014-02-01	add help function	Calvin Morrison
2014-01-31	remove commas	Calvin Morrison
2014-01-31	add --help text for kmer_total_count	Calvin Morrison
2013-11-23	better allocation of memory, make sure to free other memory	Calvin Morrison
2013-11-11	fix warnings	Calvin Morrison
2013-11-11	fix printf	Calvin Morrison
2013-11-11	added label and nonzero options	Calvin Morrison
2013-11-07	rename to counts per sequence, don't provide frequencies only counts	Calvin Morrison
2013-10-23	output individual kmers if requested	Calvin Morrison
2013-10-16	reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, er...	Calvin Morrison
2013-10-16	works with multiline sequences, abstracted most code to kmer_utils.c	Calvin Morrison
2013-10-10	don't use the num_to_index function for more speeeeed	Calvin Morrison
2013-10-10	don't depend on math.h's POW by using a bitshift instead:	Calvin Morrison
2013-10-04	no more branching	Calvin Morrison
2013-10-02	provide errno error details	Calvin Morrison
2013-10-02	formatting	Calvin Morrison
2013-10-02	use an external iterator so that we can skip over anything in range of an errorw	Calvin Morrison
2013-10-02	add check for line length. if read > kmer we are good to go	Calvin Morrison
2013-10-01	update headers, use const for better performance (.500ms on ~2gb file), updat...	Calvin Morrison
2013-09-28	idea	Calvin Morrison
2013-09-14	improve performance of convert_kmer_to_index by using a bitwise OR to convert...	Calvin Morrison
2013-09-13	don't use strlen(line) when we already have that in the read variable	Calvin Morrison
2013-09-11	use right types	Calvin Morrison
2013-09-11	move declarations to top, make sure to use the appropriate type	Calvin Morrison
2013-09-11	add headers	Calvin Morrison
2013-09-10	Initial commit of some kmer utilities.	Calvin Morrison