dna-utils

This repository contains general utilities for processing sequences in fasta files.

Tools included

kmer_total_count - this program will count each kmer in a fasta file, and print to standard out.

Usage

kmer_total_count filename kmer_size

# Example
calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8

the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on