Age | Commit message (Expand) | Author |
2013-10-17 | update kmer utils | Calvin Morrison |
2013-10-16 | reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, er... | Calvin Morrison |
2013-10-16 | kmer utils.h | Calvin Morrison |
2013-10-16 | frequency_per_sequence still needs refactoring | Calvin Morrison |
2013-10-16 | works with multiline sequences, abstracted most code to kmer_utils.c | Calvin Morrison |
2013-10-16 | added new functions | Calvin Morrison |
2013-10-16 | update makefile | Calvin Morrison |
2013-10-10 | don't use the num_to_index function for more speeeeed | Calvin Morrison |
2013-10-10 | Merge branch 'master' of github.com:mutantturkey/dna-utils into HEAD | Calvin Morrison |
2013-10-10 | update makefile | Calvin Morrison |
2013-10-10 | don't depend on math.h's POW by using a bitshift instead: | Calvin Morrison |
2013-10-06 | Update premature_optimization.md | Calvin Morrison |
2013-10-06 | Update premature_optimization.md | Calvin Morrison |
2013-10-06 | Update premature_optimization.md | Calvin Morrison |
2013-10-06 | Update premature_optimization.md | Calvin Morrison |
2013-10-06 | A story of my code | Calvin Morrison |
2013-10-04 | Merge branch 'master' of github.com:mutantturkey/dna-utils | Calvin Morrison |
2013-10-04 | no more branching | Calvin Morrison |
2013-10-03 | Update README.md | Calvin Morrison |
2013-10-03 | Create README.md | Calvin Morrison |
2013-10-02 | provide errno error details | Calvin Morrison |
2013-10-02 | formatting | Calvin Morrison |
2013-10-02 | use an external iterator so that we can skip over anything in range of an errorw | Calvin Morrison |
2013-10-02 | remove unused headers | Calvin Morrison |
2013-10-02 | update header | Calvin Morrison |
2013-10-02 | for kmer frequence per sequence as well | Calvin Morrison |
2013-10-02 | add check for line length. if read > kmer we are good to go | Calvin Morrison |
2013-10-02 | add so support for makfile | Calvin Morrison |
2013-10-01 | update headers, use const for better performance (.500ms on ~2gb file), updat... | Calvin Morrison |
2013-09-28 | idea | Calvin Morrison |
2013-09-14 | improve performance of convert_kmer_to_index by using a bitwise OR to convert... | Calvin Morrison |
2013-09-13 | don't use strlen(line) when we already have that in the read variable | Calvin Morrison |
2013-09-12 | don't use strtol | Calvin Morrison |
2013-09-11 | update convert_kmer_to_index for brevity and clarity | Calvin Morrison |
2013-09-11 | use right types | Calvin Morrison |
2013-09-11 | move declarations to top, make sure to use the appropriate type | Calvin Morrison |
2013-09-11 | add headers | Calvin Morrison |
2013-09-11 | fix binary name, and add -Wextra | Calvin Morrison |
2013-09-10 | Initial commit of some kmer utilities. | Calvin Morrison |