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| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-04 18:25:40 -0400 |
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| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-04 18:25:40 -0400 |
| commit | b98ed448e665b31290111a1f885e7fbb87424895 (patch) | |
| tree | 9718e6c402d56c50446e069f89c31f44b11e0071 | |
| parent | 2a831c405c8372f86c22c5cf3684f63209877b49 (diff) | |
| parent | 91ee7c38e7cfe000de8532ba777e8a8e3e6ba4f5 (diff) | |
Merge branch 'master' of github.com:mutantturkey/dna-utils
| -rw-r--r-- | README.md | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/README.md b/README.md new file mode 100644 index 0000000..c217e1c --- /dev/null +++ b/README.md @@ -0,0 +1,19 @@ +# dna-utils + + +This repository contains general utilities for processing sequences in fasta files. + + +### Tools included ### + + +kmer_total_count - this program will count each kmer in a fasta file, and print to standard out. + +#### Usage + + kmer_total_count filename kmer_size + + # Example + calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8 + +the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on |