diff options
Diffstat (limited to 'kmer_utils.h')
| -rw-r--r-- | kmer_utils.h | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index bf60dc4..af13227 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -11,6 +11,10 @@ unsigned long long pow_four(unsigned long long x); const unsigned char alpha[256]; // file loading functions -unsigned long long load_specific_mers_from_file(const char *fn, unsigned int kmer, size_t width, size_t *arr); -node * get_kmer_counts_from_filename(const char *fn, const unsigned int kmer); -node * get_kmer_counts_from_file(FILE *fh, const int kmer); +node * get_sparse_kmer_counts_from_filename(const char *fn, const unsigned int kmer); +node * get_sparse_kmer_counts_from_file(FILE *fh, const int kmer); + +unsigned long long * get_dense_kmer_counts_from_file(FILE *fh, const unsigned int kmer); + + +void print_dense(unsigned long long *counts, bool label, bool nonzero, unsigned int kmer); |