diff options
Diffstat (limited to 'kmer_utils.c')
| -rw-r--r-- | kmer_utils.c | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index 1b94b08..436c316 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -59,7 +59,6 @@ void check_null_ptr(void *ptr, const char *error) { } } - void reverse_string(char *s, size_t len) { char t, *d = &(s[len - 1]); while (d > s) { @@ -110,6 +109,9 @@ size_t load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, s len--; line[len] = '\0'; + char *copy = (char *) malloc(len); + check_null_ptr(copy, NULL); + memcpy(copy, line, len); if(len != kmer) { fprintf(stderr, "SKIPPING: '%s' is not length %u\n", line, kmer); @@ -119,16 +121,18 @@ size_t load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, s for(i = 0; i < len; i++) { line[i] = alpha[(int)line[i]]; } - + size_t mer = num_to_index(line, kmer, width, NULL); if(mer == width) { - fprintf(stderr, "SKIPPING: '%s' is a unrecognized mer\n", line); + fprintf(stderr, "SKIPPING: '%s' is a unrecognized mer\n", copy); + free(copy); continue; } else { arr[arr_pos] = mer; arr_pos++; } + free(copy); } fclose(fh); |