diff options
Diffstat (limited to 'kmer_utils.c')
| -rw-r--r-- | kmer_utils.c | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index 8066da1..3fd9e4c 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -6,7 +6,7 @@ #include "kmer_total_count.h" -const unsigned char alpha[256] = +static const unsigned char alpha[256] = {5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, @@ -24,15 +24,15 @@ const unsigned char alpha[256] = 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5}; -const char reverse_alpha[4] = { 'A', 'C', 'G', 'T' }; +static const char reverse_alpha[4] = { 'A', 'C', 'G', 'T' }; -inline unsigned long long pow_four(unsigned long long x) { +unsigned long long pow_four(unsigned long long x) { return (unsigned long long)1 << (x * 2); } // convert a string of k-mer size base-4 values into a // base-10 index -inline unsigned long num_to_index(const char *str, const int kmer, const long error_pos) { +unsigned long num_to_index(const char *str, const int kmer, const long error_pos) { int i = 0; unsigned long out = 0; unsigned long multiply = 1; @@ -113,7 +113,7 @@ char *strnstrip(const char *s, char *dest, int c, unsigned long long len) { return dest; } -unsigned long long * get_kmer_counts_from_file(FILE *fh, const unsigned int kmer) { +unsigned long long *get_kmer_counts_from_file(FILE *fh, const unsigned int kmer) { char *line = NULL; size_t len = 0; ssize_t read; |