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Diffstat (limited to 'kmer_locations.c')
-rw-r--r--kmer_locations.c5
1 files changed, 3 insertions, 2 deletions
diff --git a/kmer_locations.c b/kmer_locations.c
index 56bf934..a6a2dc9 100644
--- a/kmer_locations.c
+++ b/kmer_locations.c
@@ -223,7 +223,6 @@ int main(int argc, char **argv) {
}
- unsigned long long sequence = 0;
unsigned long long global_position = 0;
while ((read = getdelim(&line, &len, '>', fh)) != -1) {
@@ -241,6 +240,9 @@ int main(int argc, char **argv) {
// strip out all other newlines to handle multiline sequences
size_t seq_length = strnstrip(seq, '\n', strlen(seq));
+ if(seq[seq_length - 1] == '>')
+ seq_length --;
+
for(k = 0; k < seq_length; k++) {
seq[k] = alpha[(int)seq[k]];
}
@@ -266,7 +268,6 @@ int main(int argc, char **argv) {
if(seq_length != 0) {
seq_length--;
}
- sequence++;
global_position += seq_length;
}