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author | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-14 13:15:47 -0400 |
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committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-14 13:15:47 -0400 |
commit | 75b61da3ab27712bd96690b1e52a4c3c12788d49 (patch) | |
tree | 48fd82d6ae6a5012435bb84dd122cdf83da91e18 /kmer_locations.c | |
parent | 0a1c943dc2ab12b5c60befa6035483227dced159 (diff) |
merge
Diffstat (limited to 'kmer_locations.c')
-rw-r--r-- | kmer_locations.c | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/kmer_locations.c b/kmer_locations.c index 56bf934..a6a2dc9 100644 --- a/kmer_locations.c +++ b/kmer_locations.c @@ -223,7 +223,6 @@ int main(int argc, char **argv) { } - unsigned long long sequence = 0; unsigned long long global_position = 0; while ((read = getdelim(&line, &len, '>', fh)) != -1) { @@ -241,6 +240,9 @@ int main(int argc, char **argv) { // strip out all other newlines to handle multiline sequences size_t seq_length = strnstrip(seq, '\n', strlen(seq)); + if(seq[seq_length - 1] == '>') + seq_length --; + for(k = 0; k < seq_length; k++) { seq[k] = alpha[(int)seq[k]]; } @@ -266,7 +268,6 @@ int main(int argc, char **argv) { if(seq_length != 0) { seq_length--; } - sequence++; global_position += seq_length; } |