diff options
| -rw-r--r-- | kmer_utils.c | 32 |
1 files changed, 16 insertions, 16 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index 13eceed..e21ddb9 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -84,21 +84,21 @@ char *kmer_index_to_kmer(unsigned long long index, long kmer) { static bool translate_nucleotides_to_numbers(char *str, size_t len, const unsigned char *lookup, bool *header) { size_t i; - for(i = 0; i < len; ++i) { - if(str[i] == '>') - *header = true; - - if(*header) { - if(str[i] == '\n') - *header = false; - - str[i] = ERROR; - } - else - str[i] = lookup[(int)str[i]]; - } + for(i = 0; i < len; ++i) { + if(str[i] == '>') + *header = true; + + if(*header) { + if(str[i] == '\n') + *header = false; + + str[i] = ERROR; + } + else + str[i] = lookup[(int)str[i]]; + } - return *header; + return *header; } static size_t calculate_mer(const char *str, size_t str_len, size_t *pos, size_t kmer_len, size_t error_mer) { @@ -155,8 +155,8 @@ unsigned long long *kmer_counts_from_file(FILE *fh, const unsigned int kmer) { while((len = fread(&buffer, 1, 4096, fh)) != NULL) { size_t i = 0; - // returns header state, - header = translate_nucleotides_to_numbers(buffer, len, kmer_alpha, &header); + // returns header state, + header = translate_nucleotides_to_numbers(buffer, len, kmer_alpha, &header); for(i = 0; i < (len - kmer + 1); i++) { |