diff options
| -rw-r--r-- | kmer_utils.h | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index cf7b8a1..10d7ea4 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -12,15 +12,16 @@ unsigned long long pow_four(unsigned long long x); // Variables typedef unordered_map<size_t,unsigned long long> kmer_map; - +unsigned char alpha[256]; // file loading functions kmer_map *get_sparse_kmer_counts_from_filename(const char *fn, const unsigned int kmer); kmer_map *get_sparse_kmer_counts_from_file(FILE *fh, int kmer); -unsigned long long * get_dense_kmer_counts_from_file(FILE *fh, const unsigned int kmer); - +unsigned long long *get_dense_kmer_counts_from_file(FILE *fh, const unsigned int kmer); +unsigned long long *get_dense_kmer_counts_from_filename(const char *fn, const unsigned int kmer); +size_t load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, size_t *arr); +// print functions void print_kmer(unsigned long long *counts, bool label, bool nonzero, unsigned int kmer); void print_kmer(kmer_map *counts, bool label, bool nonzero, unsigned int kmer); -unsigned char alpha[256]; |