Initial commit of some kmer utilities.

there are two utilties included.

one is kmer_frequency_per_sequence,
which outputs a (m x n) matrix where m is the sequence, and n is the
frequency of that nmer to occur in the given sequence.

the other tool is kmer_total_count, which counts kmers for the total
file, not just one sequence

1 files changed, 1 insertions, 0 deletions

diff --git a/kmer_utils.h b/kmer_utils.h
new file mode 100644
index 0000000..a93216e
--- /dev/null
+++ b/kmer_utils.h
@@ -0,0 +1 @@
+long convert_kmer_to_index(char *str, long kmer, long error_pos);