From 5b53a787e4d1cefa5660c891791cd0df4a8fd89c Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Tue, 10 Sep 2013 23:43:56 -0400
Subject: Initial commit of some kmer utilities.

there are two utilties included.

one is kmer_frequency_per_sequence,
which outputs a (m x n) matrix where m is the sequence, and n is the
frequency of that nmer to occur in the given sequence.

the other tool is kmer_total_count, which counts kmers for the total
file, not just one sequence
---
 kmer_utils.h | 1 +
 1 file changed, 1 insertion(+)
 create mode 100644 kmer_utils.h

(limited to 'kmer_utils.h')

diff --git a/kmer_utils.h b/kmer_utils.h
new file mode 100644
index 0000000..a93216e
--- /dev/null
+++ b/kmer_utils.h
@@ -0,0 +1 @@
+long convert_kmer_to_index(char *str, long kmer, long error_pos);
-- 
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