kmer utils.h

1 files changed, 9 insertions, 0 deletions

diff --git a/kmer_utils.h b/kmer_utils.h
index f1a84b6..11506b3 100644
--- a/kmer_utils.h
+++ b/kmer_utils.h
@@ -1,2 +1,11 @@
+// kmer functions
 void convert_kmer_to_num(char *str, const unsigned long length);
 unsigned long num_to_index(const char *str, const int kmer, const long error_pos);
+unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer);
+
+// Utility functions
+char *strnstrip(const char *s, char *dest, int c, int len);
+inline unsigned long long pow_four(unsigned long long x);
+
+// Variables
+const unsigned char alpha[256];