From b43c4ae35d7996c18f13911e6c21d389b84fc6c5 Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Wed, 16 Oct 2013 12:51:08 -0400
Subject: kmer utils.h

---
 kmer_utils.h | 9 +++++++++
 1 file changed, 9 insertions(+)

(limited to 'kmer_utils.h')

diff --git a/kmer_utils.h b/kmer_utils.h
index f1a84b6..11506b3 100644
--- a/kmer_utils.h
+++ b/kmer_utils.h
@@ -1,2 +1,11 @@
+// kmer functions
 void convert_kmer_to_num(char *str, const unsigned long length);
 unsigned long num_to_index(const char *str, const int kmer, const long error_pos);
+unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer);
+
+// Utility functions
+char *strnstrip(const char *s, char *dest, int c, int len);
+inline unsigned long long pow_four(unsigned long long x);
+
+// Variables
+const unsigned char alpha[256]; 
-- 
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