diff options
author | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-10 23:43:56 -0400 |
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committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-10 23:43:56 -0400 |
commit | 5b53a787e4d1cefa5660c891791cd0df4a8fd89c (patch) | |
tree | 005983f5d068409c9be44e614b4c1722cde37dd5 /kmer_utils.h |
Initial commit of some kmer utilities.
there are two utilties included.
one is kmer_frequency_per_sequence,
which outputs a (m x n) matrix where m is the sequence, and n is the
frequency of that nmer to occur in the given sequence.
the other tool is kmer_total_count, which counts kmers for the total
file, not just one sequence
Diffstat (limited to 'kmer_utils.h')
-rw-r--r-- | kmer_utils.h | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/kmer_utils.h b/kmer_utils.h new file mode 100644 index 0000000..a93216e --- /dev/null +++ b/kmer_utils.h @@ -0,0 +1 @@ +long convert_kmer_to_index(char *str, long kmer, long error_pos); |