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| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-28 11:52:45 -0700 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-28 11:52:45 -0700 |
| commit | 4d00f90fd8b1b9e38eea297336ee83a5e5c9e764 (patch) | |
| tree | 23c4d52aeb90b3c4cf2f8166161a06244a08cab3 /kmer_total_count.c | |
| parent | 8d1e990611a128d123e47f8a068ff9b045794db4 (diff) | |
idea
Diffstat (limited to 'kmer_total_count.c')
| -rw-r--r-- | kmer_total_count.c | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/kmer_total_count.c b/kmer_total_count.c index 6d07e13..2416bfa 100644 --- a/kmer_total_count.c +++ b/kmer_total_count.c @@ -43,8 +43,10 @@ int main(int argc, char **argv) { while ((read = getline(&line, &len, fh)) != -1) { if(line[0] != '>') { + convert_kmer_to_num(line, read); + for(i = 0; i < read - kmer; i++) { - counts[convert_kmer_to_index(&line[i],kmer, width)]++; + counts[num_to_index(&line[i],kmer, width)]++; } } } |