C++ version using unordered map

1 files changed, 4 insertions, 4 deletions

diff --git a/Makefile b/Makefile
index 5a1f34d..f9db836 100644
--- a/Makefile
+++ b/Makefile
@@ -1,6 +1,6 @@
 VERSION=\"0.0.2\"
-CC = gcc
-CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra
+CC = g++
+CFLAGS = -O3 -s -mtune=native -Wall -Wextra -DVERSION=$(VERSION) -std=c++11
 DESTDIR = /usr/local/
 
 
@@ -12,8 +12,8 @@ libkmer.o: kmer_utils.c
 	$(CC) -c kmer_utils.c -o libkmer.o $(CFLAGS) -fPIC
 libkmer.so: libkmer.o
 	$(CC) kmer_utils.c -o libkmer.so $(CFLAGS) -shared -fPIC
-kmer_total_count: sparse.o libkmer.o kmer_total_count.c kmer_utils.h
-	$(CC) sparse.o libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
+kmer_total_count: kmer_utils.c kmer_total_count.c kmer_utils.h
+	$(CC) kmer_utils.cpp kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
 kmer_counts_per_sequence: libkmer.o kmer_counts_per_sequence.c kmer_utils.h
 	$(CC) libkmer.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS)