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| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-10 23:43:56 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-09-10 23:43:56 -0400 |
| commit | 5b53a787e4d1cefa5660c891791cd0df4a8fd89c (patch) | |
| tree | 005983f5d068409c9be44e614b4c1722cde37dd5 /Makefile | |
Initial commit of some kmer utilities.
there are two utilties included.
one is kmer_frequency_per_sequence,
which outputs a (m x n) matrix where m is the sequence, and n is the
frequency of that nmer to occur in the given sequence.
the other tool is kmer_total_count, which counts kmers for the total
file, not just one sequence
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..df96037 --- /dev/null +++ b/Makefile @@ -0,0 +1,13 @@ +VERSION=\"v0.0.1\" +CC = gcc +CFLAGS = -O3 -s -mtune=native -Wall -lm -DVERSION=$(VERSION) + +all: kmer_total_count kmer_frequency_per_sequence + +kmer_total_count: + $(CC) kmer_total_count.c kmer_utils.c -o kmer_count_total $(CFLAGS) +kmer_frequency_per_sequence: + $(CC) kmer_frequency_per_sequence.c kmer_utils.c -o kmer_frequency_per_sequence $(CFLAGS) + +clean: + rm -vf kmer_total_count kmer_frequency_per_sequence |