From 5b53a787e4d1cefa5660c891791cd0df4a8fd89c Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 10 Sep 2013 23:43:56 -0400 Subject: Initial commit of some kmer utilities. there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence --- Makefile | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 Makefile (limited to 'Makefile') diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..df96037 --- /dev/null +++ b/Makefile @@ -0,0 +1,13 @@ +VERSION=\"v0.0.1\" +CC = gcc +CFLAGS = -O3 -s -mtune=native -Wall -lm -DVERSION=$(VERSION) + +all: kmer_total_count kmer_frequency_per_sequence + +kmer_total_count: + $(CC) kmer_total_count.c kmer_utils.c -o kmer_count_total $(CFLAGS) +kmer_frequency_per_sequence: + $(CC) kmer_frequency_per_sequence.c kmer_utils.c -o kmer_frequency_per_sequence $(CFLAGS) + +clean: + rm -vf kmer_total_count kmer_frequency_per_sequence -- cgit v1.2.3