add OSX support, or any supprot for people without getline

1 files changed, 43 insertions, 0 deletions

diff --git a/Makefile.osx b/Makefile.osx
new file mode 100644
index 0000000..104512f
--- /dev/null
+++ b/Makefile.osx
@@ -0,0 +1,43 @@
+VERSION=\"0.0.5\"
+CC = x86_64-apple-darwin10-g++-mp-4.8
+CFLAGS = -O3 -s -march=native -Wall -Wextra -DVERSION=$(VERSION) -std=c++11
+
+DESTDIR = /usr/local
+
+all: libkmer.so kmer_total_count kmer_counts_per_sequence kmer_utils.o \
+		 kmer_locations kmer_continuous_count 
+
+getline.o: getline/getline.c 
+	$(CC) -c getline/getline.c -o getline.o $(CFLAGS)
+
+kmer_utils.o: kmer_utils.c getline.o
+	$(CC) -c kmer_utils.c getline.o -O $(CFLAGS) -fPIC -DFORCE_GETLINE=1
+
+libkmer.so: kmer_utils.o getline.o
+	$(CC) getline.o kmer_utils.o -o libkmer.so $(CFLAGS) -shared -fPIC
+
+kmer_total_count: kmer_utils.o kmer_total_count.c kmer_utils.h
+	$(CC) getline.o kmer_utils.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
+
+kmer_counts_per_sequence: kmer_utils.o kmer_counts_per_sequence.c kmer_utils.h
+	$(CC) getline.o kmer_utils.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS) -DFORCE_GETLINE=1
+
+kmer_continuous_count: kmer_utils.o kmer_continuous_count.c kmer_utils.h
+	$(CC) getline.o kmer_utils.o kmer_continuous_count.c -o kmer_continuous_count $(CLIBS) $(CFLAGS)
+
+kmer_locations: kmer_utils.o kmer_locations.c kmer_utils.h
+	$(CC) getline.o kmer_utils.o kmer_locations.c -o kmer_locations $(CLIBS) $(CFLAGS) -DFORCE_GETLINE=1
+clean:
+	rm -vf kmer_total_count kmer_counts_per_sequence kmer_continuous_count \
+	kmer_utils.o libkmer.so kmer_locations getline.o
+
+debug: CFLAGS = -ggdb -Wall -Wextra -DVERSION=$(VERSION)\"-debug\" -std=c++11
+debug: all
+
+install: all
+	install kmer_counts_per_sequence $(DESTDIR)/bin
+	install kmer_total_count $(DESTDIR)/bin
+	install kmer_continuous_count $(DESTDIR)/bin
+	install kmer_locations $(DESTDIR)/bin
+	cp -vf  libkmer.so  $(DESTDIR)/lib/
+