rename to counts per sequence, don't provide frequencies only counts

1 files changed, 29 insertions, 29 deletions

diff --git a/kmer_counts_per_sequence.c b/kmer_counts_per_sequence.c
index d518efc..66accc8 100644
--- a/kmer_counts_per_sequence.c
+++ b/kmer_counts_per_sequence.c
@@ -9,20 +9,20 @@
 unsigned long position = 0;
 int main(int argc, char **argv) {
 
-  char *line = NULL;
-  size_t len = 0;
-  ssize_t read;
+	char *line = NULL;
+	size_t len = 0;
+	ssize_t read;
 
-  if(argc != 3) {
-    printf("Please supply a filename and a kmer\n");
-    exit(EXIT_FAILURE);
-  }
+	if(argc != 3) {
+		printf("Please supply a filename and a kmer\n");
+		exit(EXIT_FAILURE);
+	}
 
-  FILE *fh = fopen(argv[1], "r" );
-  if(fh == NULL) {
-    fprintf(stderr, "Error opening %s - %s\n", argv[1], strerror(errno));
-    exit(EXIT_FAILURE);
-  }
+	FILE *fh = fopen(argv[1], "r" );
+	if(fh == NULL) {
+		fprintf(stderr, "Error opening %s - %s\n", argv[1], strerror(errno));
+		exit(EXIT_FAILURE);
+	}
 
 	unsigned long kmer = atoi(argv[2]);
 	if(kmer == 0) { 
@@ -36,36 +36,36 @@ int main(int argc, char **argv) {
 	if(counts == NULL) 
 		exit(EXIT_FAILURE);
 
-  while ((read = getline(&line, &len, fh)) != -1) {
-    if(line[0] != '>' && (read > kmer)) {
+	while ((read = getline(&line, &len, fh)) != -1) {
+		if(line[0] != '>' && (read > kmer)) {
 
-      unsigned int i = 0;
-      unsigned long total = 0;
+			unsigned int i = 0;
+			unsigned long total = 0;
 
 			// reset our count matrix to zero
 			memset(counts, 0, width * sizeof(unsigned long long));
 
-  		for(i = 0; i < read - kmer; i++) {
+			for(i = 0; i < read - kmer; i++) {
 				line[i] = alpha[(int)line[i]];
 			}
 
-      for(i = 0; i < read - kmer; i++) {
-        counts[num_to_index(&line[i],kmer, width)]++;
-      }
+			for(i = 0; i < read - kmer; i++) {
+				counts[num_to_index(&line[i],kmer, width)]++;
+			}
 
-      for(i = 0; i < width; i++)
-        total += counts[i];
+			for(i = 0; i < width; i++)
+				total += counts[i];
 
-      for(i = 0; i < width - 1; i++)
-        printf("%llu\t", counts[i]);
-      printf("%llu\n", counts[width - 1]);
+			for(i = 0; i < width - 1; i++)
+				printf("%llu\t", counts[i]);
+			printf("%llu\n", counts[width - 1]);
 
-    }
-  }
+		}
+	}
 
 	free(counts);
-  free(line);
+	free(line);
 
 
-  return EXIT_SUCCESS;
+	return EXIT_SUCCESS;
 }