index
:
SelectiveWholeGenomeAmplification.git
master
Parameterized sweeps of FASTA files to help locate useful primers. Work done for Penn bio research guys
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
src
/
score_mers.py
Age
Commit message (
Expand
)
Author
2014-03-25
remove stray ;
Calvin Morrison
2014-03-25
start to add debug variable to score_mers
Calvin Morrison
2014-03-25
Update scoring function.
Calvin Morrison
2014-03-24
Major Updates:
Calvin Morrison
2014-03-21
add end of sequences in as points in our array
Calvin Morrison
2014-03-19
add output also to scores file
Calvin Morrison
2014-03-18
update scoring equation
Calvin Morrison
2014-03-13
whistpace and 1
Calvin Morrison
2014-03-13
Refactoring, features, rage!
Calvin Morrison
2014-03-13
add coutning points for reverses
Calvin Morrison
2014-03-13
add comments, add workflow explaination, move pop_{fg,bg} fns
Calvin Morrison
2014-03-13
refactor binding layout, add comments
Calvin Morrison
2014-03-05
should work:
Calvin Morrison
2014-03-05
more verbose score output
Calvin Morrison
2014-03-03
update defaults and align variable names with global env variables
Calvin Morrison
2014-03-03
add load_heterodimer_dic function
Calvin Morrison
2014-03-03
check heterodimer dic first because it's likely to be the #1 cause of issues
Calvin Morrison
2014-03-03
add check to see if results are even possible, and use gzip out
Calvin Morrison
2014-03-03
update arguemnts, make {fg,bg}_genome_length global
Calvin Morrison
2014-03-03
update parameters file
Calvin Morrison
2014-02-05
use a ifilter outside
Calvin Morrison
2014-02-04
seperate out scoring stuff into our iterator as a filter
Calvin Morrison
2014-02-04
add check functions to filter without calling the jobs
Calvin Morrison
2014-02-04
max_consecutive speed up
Calvin Morrison
2014-01-30
update score mers with hererodimers
Calvin Morrison
2014-01-29
add filtering based on consecutive mer lengths
Calvin Morrison