diff options
Diffstat (limited to 'src/score_mers.py')
| -rwxr-xr-x | src/score_mers.py | 8 |
1 files changed, 7 insertions, 1 deletions
diff --git a/src/score_mers.py b/src/score_mers.py index 9d90ae2..0ddeb91 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -487,6 +487,8 @@ def main(): # load it into our fg and bg counts into their dictionaries for mer in selected_mers: + if mer.startswith("#"): + continue split_mer = mer.split() fg_mers[split_mer[0]] = [] bg_mers[split_mer[0]] = int(split_mer[2]) @@ -494,7 +496,7 @@ def main(): selected_mers = [x.split()[0] for x in selected_mers] if len(selected_mers) is 0: - print "no merss found." + print "no mers found." exit(1) # we already have our background counts @@ -511,6 +513,8 @@ def main(): combination_fh = open(args.combination_file, "r") for line in combination_fh: + if line.startswith("#"): + continue mers = line.split() combinations.append(mers) for mer in mers: @@ -529,6 +533,8 @@ def main(): mer_fh = open(args.mer_file, "r") for mer in mer_fh: + if mer.startswith("#"): + continue mer = mer.strip() if(len(mer.split()) > 1): print "skipping line:", mer, "each line should contain only one mer" |