diff options
Diffstat (limited to 'SelectiveGenomeAmplification')
| -rwxr-xr-x | SelectiveGenomeAmplification | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index b875fe0..ad8d4a5 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -56,9 +56,12 @@ fi # maximum number of mers that are consecutively binding : ${max_consecutive_binding=4} -# fg_weight, now much to weight to give the higher bindnig primers +# fg_weight, how much to weight to give the higher bindnig primers : ${fg_weight=0} +# primer_weight, how much weight to give to sets with a higher number of priemrs. (between 0 and 1) +: ${primer_weight=0} + export ignore_mers export min_mer_range export max_mer_range @@ -72,6 +75,7 @@ export max_melting_temp export min_melting_temp export fg_weight +export primer_weight # Make our output directory @@ -131,7 +135,7 @@ if [ "$ignore_mers" ]; then fi echo "outputing current run parameters" -for var in ignore_mers min_mer_range max_check cpus max_consecutive_binding max_mer_range max_select min_mer_count max_mer_distance max_melting_temp min_melting_temp foreground background; do +for var in ignore_mers min_mer_range max_mer_range max_check cpus max_consecutive_binding max_select min_foreground_binding_average max_mer_distance min_melting_temp max_melting_temp foreground background; do echo $var "${!var}" >> $output_directory/$current_run/parameters done; |