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Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 1 |
1 files changed, 1 insertions, 0 deletions
@@ -164,6 +164,7 @@ max\_mer\_distance | 5000 | maximum distance between mers in foreground min\_melting\_temp | 0° | minimum melting temp of mers max\_melting\_temp | 30° | maximum melting temp of mers min\_foreground\_binding\_average | 50000 | eliminate mers that appear less frequently than the average (length of foreground / # of occurrances) +min\_bg\_ratio | Not Enabled | eliminate mers where the background ration is less than the minimum ignore\_mers | Not Enabled | mers to explicitly ignore, space separated ex. ignore\_mers="ACAGTA ACCATAA ATATATAT" ignore\_all\_mers\_from\_files | Not Enabled | ignore any mers found in these files. space separated. output\_directory | $foreground\_$background/ | ex. if fg is Bacillus.fasta and bg is HumanGenome.fasta then folder would be $PWD/Bacillus.fasta\_HumanGenome\_output.fasta/ |