diff options
| -rwxr-xr-x | SelectiveGenomeAmplification | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index 9358e39..d5e1780 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -102,7 +102,6 @@ for fasta_file in $foreground $background; do done done - fg_counts=$counts_directory/$(basename $foreground)-counts bg_counts=$counts_directory/$(basename $background)-counts @@ -120,6 +119,10 @@ if [ "$ignore_mers" ]; then done fi +echo "outputing current run parameters" +for var in ignore_mers min_mer_range max_mer_range max_select min_mer_count max_mer_distance max_melting_temp min_melting_temp; do + echo $var "${!var}" >> $output_directory/$current_run/parameters +done; echo "checking if mers are below melting temperature in the foreground" rm $fg_counts-non-melting |