diff options
| -rwxr-xr-x | SelectiveGenomeAmplification | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index 6010c08..25995c0 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -201,11 +201,11 @@ bg_counts=$counts_directory/$bg_basename-counts final_fg_counts=$output_directory/$current_run/$fg_basename-filtered-counts selected=$output_directory/$current_run/selected-mers -ignore_mers_counts="$output_directory/$current_run/filter/1-$fg_basename-ignore-mers" -ignore_all_mers_counts="$output_directory/$current_run/filter/2-$fg_basename-ignore-all-mers" -average_binding="$output_directory/$current_run/filter/3-$fg_basename-average-binding" -non_melting="$output_directory/$current_run/filter/4-$fg_basename-non-melting" -consecutive_binding="$output_directory/$current_run/filter/5-$fg_basename-consecutive-binding" +ignore_mers_counts="$output_directory/$current_run/passes-filter/1-$fg_basename-ignore-mers" +ignore_all_mers_counts="$output_directory/$current_run/passes-filter/2-$fg_basename-ignore-all-mers" +average_binding="$output_directory/$current_run/passes-filter/3-$fg_basename-average-binding" +non_melting="$output_directory/$current_run/passes-filter/4-$fg_basename-non-melting" +consecutive_binding="$output_directory/$current_run/passes-filter/5-$fg_basename-consecutive-binding" # Make our output directory if [[ ! -d "$output_directory" ]]; then @@ -228,8 +228,8 @@ if [[ ! -d $output_directory/$current_run ]]; then fi # Make our filter directory -if [[ ! -d "$output_directory/$current_run/filter" ]]; then - mkdir "$output_directory/$current_run/filter" +if [[ ! -d "$output_directory/$current_run/passes-filter" ]]; then + mkdir "$output_directory/$current_run/passes-filter" fi echo "Outputting current run parameters" |