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-rwxr-xr-xSelectiveWholeGenomeAmplification2
1 files changed, 1 insertions, 1 deletions
diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification
index 0521ef5..8fb5e4f 100755
--- a/SelectiveWholeGenomeAmplification
+++ b/SelectiveWholeGenomeAmplification
@@ -31,7 +31,7 @@ check_mers() {
for (( mer = min_mer_range; mer <= max_mer_range; mer++)) ; do
if [[ ! -e "$counts"-counts-"$mer" ]]; then
echo " checking $mer mers for $fasta_file"
- kmer_continuous_count -c -i "$fasta_file" -k "$mer" -l -n > "$counts"-counts-"$mer" || exit 1
+ kmer_total_count -c -i "$fasta_file" -k "$mer" -l -n > "$counts"-counts-"$mer" || exit 1
else
echo " $mer-mers already done for $fasta_file (assuming no change)"
fi