diff options
| -rwxr-xr-x | src/score_mers.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/src/score_mers.py b/src/score_mers.py index 9ea9d4a..c10b04a 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -105,6 +105,10 @@ def populate_locations(input_fn, mers, mer): for line in strstream.stdout: mers[mer].pts.append(int(line)) + cmd = 'tac ' + input_fn + " | tr '[ACGT]' '[TGCA]' | strstreamone " + mer + " " + input_fn + strstream = Popen(cmd, stdout=PIPE, shell=True) + for line in strstream.stdout: + mers[mer].pts.append(int(line)) def apply_filters(combination): for mer in combination: |