diff options
| -rwxr-xr-x | SelectiveGenomeAmplification.sh | 11 |
1 files changed, 10 insertions, 1 deletions
diff --git a/SelectiveGenomeAmplification.sh b/SelectiveGenomeAmplification.sh index 2b43a47..2a32d9b 100755 --- a/SelectiveGenomeAmplification.sh +++ b/SelectiveGenomeAmplification.sh @@ -8,6 +8,8 @@ : ${counts_directory=$PWD/counts} # temp directory : ${tmp_directory=$PWD/tmp} +# output directory +: ${tmp_directory=$PWD/outputs} # min/maximum kmer melting point : ${max_melting_temp=30} : ${min_melting_temp=0} @@ -30,16 +32,23 @@ export max_mer_distance export max_melting_temp export min_melting_temp -PATH=$PATH:`pwd` +PATH=$PATH:$PWD +# Make our counts directory if [ ! -d $counts_directory ]; then mkdir $counts_directory fi +# Make our temporary directory if [ ! -d $tmp_directory ]; then mkdir $tmp_directory fi +# Make our output directory +if [ ! -d $output_directory ]; then + mkdir $output_directory +fi + foreground=$1 background=$2 |