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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 14:08:16 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 14:08:16 -0400 |
| commit | ee089c90b04c6a00db168727b0972c9484b3f8b5 (patch) | |
| tree | baa6c2ea15a13b9a909af8a39888c5e0925645e7 /src/score_mers.py | |
| parent | 425573f74f71a362b2a2cc810a14b82315e713f2 (diff) | |
proper sizes with custom mers
Diffstat (limited to 'src/score_mers.py')
| -rwxr-xr-x | src/score_mers.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/src/score_mers.py b/src/score_mers.py index fc1e81c..ef90be1 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -249,11 +249,11 @@ def score_all_combinations(mers): fh = open(output_file, 'wb') write_header(fh) - max_size = max_select+1 - if len(mers) < max_select + 1: + max_size = max_select + if len(mers) < max_select: max_size = len(mers) + 1 - for select_n in range(1, max_size ): + for select_n in range(1, max_size + 1 ): print "scoring size ", select_n, t = time.time() scores_it = p.imap_unordered(score, combinations(mers, select_n), chunksize=8192) |