add average binding filter

1 files changed, 0 insertions, 29 deletions

diff --git a/src/below_melting_temperature.py b/src/below_melting_temperature.py
deleted file mode 100644
index e91e777..0000000
--- a/src/below_melting_temperature.py
+++ /dev/null
@@ -1,29 +0,0 @@
-#!/usr/bin/env python
-import sys
-from Bio.SeqUtils.MeltingTemp import Tm_staluc
-
-# naiive
-def in_temp_range(kmer):
-
-	A = kmer.count('A')
-	C = kmer.count('C')
-	G = kmer.count('G')
-	T = kmer.count('T')
-
-	melt_temp = 0.0;
-
-	if len(kmer) < 13:
-		melt_temp = ((A+T) * 2) + ((C+G) * 4)
-	else:
-		melt_temp = 64.9 + 41*(G+C-16.4)/(A+T+G+C)
-
-	return min_melting_temp < melt_temp < max_melting_temp
-
-min_melting_temp = float(sys.argv[1])
-max_melting_temp = float(sys.argv[2])
-
-
-output = []
-for line in sys.stdin:
-	if min_melting_temp < Tm_staluc(line.split("\t")[0]) < max_melting_temp:
-		sys.stdout.write(line)