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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 13:27:06 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 13:27:06 -0400 |
| commit | 5a5d89d3881cb0d9014168845d96e5eebeb2bd42 (patch) | |
| tree | 72ad2c1cb7aad7a9100c640b81741db96786fa48 /SelectiveGenomeAmplificationUI | |
| parent | 59ac62e890a7a1c11c6e316f12fd284b31c0c4ab (diff) | |
Add feature to have a top-scores file. closes issue #21
Diffstat (limited to 'SelectiveGenomeAmplificationUI')
| -rwxr-xr-x | SelectiveGenomeAmplificationUI | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/SelectiveGenomeAmplificationUI b/SelectiveGenomeAmplificationUI index edd56c8..297471b 100755 --- a/SelectiveGenomeAmplificationUI +++ b/SelectiveGenomeAmplificationUI @@ -39,11 +39,11 @@ questions = [ 'default_str': '35', 'variable': 'max_check' }, - {'question': 'Enter mers to ignore? (space seperated)', + {'question': 'enter mers to ignore? (space seperated)', 'default_str': "None", 'variable': 'ignore_mers'}, - {'question': 'Enter files to ignore all mers from? (space seperated)', + {'question': 'enter files to ignore all mers from? (space seperated)', 'default_str': "None", 'variable': 'ignore_all_mers_from_files'}, @@ -55,7 +55,8 @@ questions = [ { 'question': 'minimum melting temperature for mers?', 'default_str': '0c', 'variable': 'min_melting_temp' }, { 'question': 'maximum number of consecutively binding mers in hetero and homodimers?', 'default_str': '4', 'variable': 'max_consecutive_binding' }, { 'question': 'what extra weight do you want for highgly binding primers? (0-1)', 'default_str': '0', 'variable': 'fg_weight' }, - { 'question': 'what extra weight do you want for sets with a higher number of primers? (0-1)', 'default_str': '0', 'variable': 'primer_weight'} + { 'question': 'what extra weight do you want for sets with a higher number of primers? (0-1)', 'default_str': '0', 'variable': 'primer_weight'}, + { 'question': 'How many scored sets would you like in the top_scored_sets output file?', 'default_str':'10000', 'variable': 'output_top_nb'} ] def bool_ask(ask_string, default): |