add filtering based on consecutive mer lengths

1 files changed, 10 insertions, 12 deletions

diff --git a/Makefile b/Makefile
index 8837865..f33dd1a 100644
--- a/Makefile
+++ b/Makefile
@@ -1,24 +1,22 @@
 VERSION=\"v0.0.1\"
 CC = gcc
 CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra
-SRC = src
-BIN = bin
 DEST = /usr/local/bin/
 
-all: output_dir $(BIN)/strstream $(BIN)/melting_range $(BIN)/strstreamone
+all: output_dir bin/strstream bin/filter_melting_range bin/strstreamone
 
 output_dir: 
-	mkdir -p $(BIN)
-$(BIN)/strstream: $(SRC)/strstream.c
-	$(CC) $(SRC)/strstream.c -o $(BIN)/strstream $(CLIBS) $(CFLAGS)
-$(BIN)/strstreamone: $(SRC)/strstreamone.c
-	$(CC) $(SRC)/strstreamone.c -o $(BIN)/strstreamone $(CLIBS) $(CFLAGS)
-$(BIN)/melting_range: $(SRC)/melting_range.c
-	$(CC) $(SRC)/melting_range.c -o $(BIN)/melting_range $(CLIBS) $(CFLAGS)
+	mkdir -p bin
+bin/strstream: src/strstream.c
+	$(CC) src/strstream.c -o bin/strstream $(CLIBS) $(CFLAGS)
+bin/strstreamone: src/strstreamone.c
+	$(CC) src/strstreamone.c -o bin/strstreamone $(CLIBS) $(CFLAGS)
+bin/filter_melting_range: src/filter_melting_range.c
+	$(CC) src/filter_melting_range.c -o bin/filter_melting_range $(CLIBS) $(CFLAGS)
 
 clean:
-	rm -vf $(BIN)/strstream $(BIN)/melting_range $(BIN)/strstreamone
+	rm -vf bin/* -Rv
 
 install: all
-	install -c $(BIN)/strstream $(BIN)/melting_range $(BIN)/strstreamone SelectiveGenomeAmplification select_mers.py score_mers.py $(DEST)
+	install -c bin/strstream bin/filter_melting_range bin/strstreamone SelectiveGenomeAmplification src/select_mers.py src/score_mers.py src/filter_max_consecutive_binding.py $(DEST)